Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs202001770 chr13:114170881 A/C 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs202080412 chr8:53841925 TC/T 0.000433 173 24.47 27.27 6.1 KM Plot
PCPG rs202089630 chr2:118564601 C/T 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs202133746 chr2:61445299 GT/G 8.88E-5 174 21.95 30.93 10.3 KM Plot
PCPG rs202191623 chr2:217052023 A/ATT 7.36E-5 175 25.17 28.3 2.93 KM Plot
PCPG rs202234710 chr2:176196459 CAAA/C 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs202236966 chr2:24335878 A/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs2024246 chr14:74625576 C/T 3.67E-12 178 25.28 27.27 10.3 KM Plot
PCPG rs2024598 chr6:131711572 T/C 7.3E-6 174 15.33 28.3 24.7 KM Plot
PCPG rs2024599 chr6:131711658 C/T 7.3E-6 174 15.33 28.3 24.7 KM Plot
PCPG rs2024600 chr6:131711753 C/T 0.000241 175 15.33 27.78 24.7 KM Plot
PCPG rs2028354 chr2:209984535 G/T 1.15E-9 178 19.87 24.3 26.57 KM Plot
PCPG rs2029474 chr10:69751813 G/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs2036453 chr4:78948421 G/A 0 176 2.93 25.87 25.28 KM Plot
PCPG rs2037092 chr3:80573964 T/C 6.58E-5 177 19.53 24.03 27.2 KM Plot